A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

🧬High-performance genetics- and genomics-related data visualization using Makie.jl

Simulation, visualization, and inference of individual level infectious disease models with Julia

A modern genomics framework for julia

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

Stochastic Gillespie-type simulations using Julia

Sequence alignment tools

A data structure for efficient manipulation of sets of intervals

(No maintenance) Detect gene fusion directly from raw fastq files

Phylogenetic trees in Julia

Utilities to read/write FASTA format files in Julia

K-mer counting algorithms and count-data utilities for the BioJulia framework

Simulate sequence data and complicated pedigree structures

Progressive alignment scripts for protein sequences

A Julia package for finding longest common and longest contiguous subsequences

Phylogenetic tree type for julia

Estimation of coalescence times between sequences.

Ensemble Samplers for Julia

Extension to ArgParse.jl, enabling parsing of command line parameters to types in Bio.jl.

Detect correlated evolution on phylogenies

-

Code for the Pure-seq project

Manage Local Genome Annotation files

HyperNEAT

YARS communication for julia

-

Optimal Bayesian classification for RNA-Seq data

-

-

-

-