Genomics Packages
-
GeneticsMakie.jl77🧬High-performance genetics- and genomics-related data visualization using Makie.jl
-
MerCounting.jl12K-mer counting algorithms and count-data utilities for the BioJulia framework
-
GenomeGraphs.jl67A modern genomics framework for julia
-
BioAlignments.jl60Sequence alignment tools
-
BioArgParse.jl3Extension to ArgParse.jl, enabling parsing of command line parameters to types in Bio.jl.
-
SpeedDate.jl5Estimation of coalescence times between sequences.
-
PhyloTrees.jl22Phylogenetic trees in Julia
-
VariantCall.jl1-
-
FusionDirect.jl25(No maintenance) Detect gene fusion directly from raw fastq files
-
OpenGene.jl64(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
-
COSMIC.jl0-
-
TimeTrees.jl5Phylogenetic tree type for julia
-
LCS.jl7A Julia package for finding longest common and longest contiguous subsequences
-
Ensemble.jl4Ensemble Samplers for Julia
-
PureSeq.jl1Code for the Pure-seq project
-
Pathogen.jl72Simulation, visualization, and inference of individual level infectious disease models with Julia
-
BismarkSummary.jl0-
-
PseudoGenomes.jl0-
-
XSim.jl11Simulate sequence data and complicated pedigree structures
-
BioFeatures.jl0-
-
GenomicTiles.jl0-
-
HyperNEAT.jl1HyperNEAT
-
ProgressiveAligner.jl8Progressive alignment scripts for protein sequences
-
PhyloNetworks.jl155A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks
-
YARS.jl0YARS communication for julia
-
GenomeAnnotations.jl1Manage Local Genome Annotation files
-
IntervalTrees.jl44A data structure for efficient manipulation of sets of intervals
-
Gillespie.jl60Stochastic Gillespie-type simulations using Julia
-
OBC.jl0Optimal Bayesian classification for RNA-Seq data
-
Pagel.jl2Detect correlated evolution on phylogenies
-
FastaIO.jl16Utilities to read/write FASTA format files in Julia
View all packages