OBC

An optimal Bayesian classification library and runtime for RNA-Seq data.

Installation Instructions

• Install the latest release of Julia
• Start a Julia terminal and run the following commands:

Pkg.update()
Pkg.clone("git://github.com/binarybana/OBC.jl.git")

Usage

You are now ready to use the OBC Julia library. The core operations look something like the following,

using OBC
data1,data2 = ... # your datasets as integer valued matrices (samples x genes)
d1,d2 = ... # the normalization factors for each dataset (float arrays)
cls = MPM.mpm_classifier(data1, data2, d1=d1, d2=d2)
MPM.sample(cls, 10000)
bemc = MPM.bee_e_mc(cls, (mean(d1),mean(d2)))

For a full example (with code to generate synthetic data) see the run.jl runner script.