Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

A library of data interpolation and smoothing functions

Implementation of normalising flows and constrained random variable transformations

A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

Biological sequences for the julia language

Algorithms from circuit theory to predict connectivity in heterogeneous landscapes

Julia for Whole-genome Analysis Software

A Julia package to read, write and manipulate macromolecular structures

Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:

🧬High-performance genetics- and genomics-related data visualization using Makie.jl

A Julia package to analyze protein sequences, structures, and evolutionary information

Simulation, visualization, and inference of individual level infectious disease models with Julia

Inference of microbial interaction networks from large-scale heterogeneous abundance data

Everything you've never dreamed about measuring on ecological networks.

Everything you've never dreamed about measuring on ecological networks.

A modern genomics framework for julia

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

CellMLToolkit.jl is a Julia library that connects CellML models to the Scientific Julia ecosystem.

Choo-choo

Parse and process FASTA and FASTQ formatted files of biological sequences.

Stochastic Gillespie-type simulations using Julia

Sequence alignment tools

High-level, high-performance, constraint-based reconstruction and analysis in Julia

A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.

Julia framework for spatial ecology - data types and utilities

Plotting and interface tools for biology.

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Neuroimaging in Julia

Neuroimaging in Julia

For analysis of microbiome and microbial community data

A lightweight and powerful Julia package for computational pipelines and workflows.

Population Genetics in Julia

Compressed storage for SNP data

A data structure for efficient manipulation of sets of intervals

Methods for inferring undirected networks from data

Fast and scalable cell search tool

Datastructures and algorithms for working with genetic variation

A unified framework for skeletonization, morphological analysis, and connectivity analysis.

Julia Spiking Neural Network Simulator