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Implementation of normalising flows and constrained random variable transformations

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Sequence alignment tools

Extension to ArgParse.jl, enabling parsing of command line parameters to types in Bio.jl.

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[DEPRECATED] I deleted this repo a while ago. Forked backup from https://github.com/UnofficialJuliaMirror/Bioinformatics.jl-c429c406-9079-5a14-8339-dedc8835de90.

Plotting and interface tools for biology.

Julia utilities for interacting with biomedical databases and biomedical application programming interfaces (APIs)

Biological sequences for the julia language

Julia interface to APIs for various bio-related web services

A Julia package to read, write and manipulate macromolecular structures

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Julia functions to process electroencephalographic (EEG) recordings

Fast and scalable cell search tool

CellMLToolkit.jl is a Julia library that connects CellML models to the Scientific Julia ecosystem.

Algorithms from circuit theory to predict connectivity in heterogeneous landscapes

High-level, high-performance, constraint-based reconstruction and analysis in Julia

Choo-choo

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✂️ Pooled CRISPR screen optimization tool

A library of data interpolation and smoothing functions

DCE MRI analysis in Julia

A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

Julia package for diversity measurement

Everything you've never dreamed about measuring on ecological networks.

Everything you've never dreamed about measuring on ecological networks.

Neuroimaging in Julia

Electronic Microscopy Image Reconstruction Toolbox using julia language

Ensemble Samplers for Julia

A Julia package to efficiently fold all local and long-range RNA duplexes.

Utilities to read/write FASTA format files in Julia

Parse and process FASTA and FASTQ formatted files of biological sequences.

An agent based life cycle model for managed fisheries

Inference of microbial interaction networks from large-scale heterogeneous abundance data

(No maintenance) Detect gene fusion directly from raw fastq files

Functions and types to access GBIF data from Julia

🧬High-performance genetics- and genomics-related data visualization using Makie.jl

Datastructures and algorithms for working with genetic variation