BioGraph.jl

Description

BioGraph is a Julia package for handle genome graph in the GFA format. It reads information from GFA input, extract simple bidirected graphs and find the longest linear path in those graphs.

Complete documentation is available here

Installation

You can install BioGraph from the julia REPL. Press ] to enter pkg mode, and enter the following:

add BioGraph

Examples of uses

A set of Jupyter books for the application on Asian rice genomes is available here