Bioinformatics Packages
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DiffEqBiological.jl455Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
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BioSequences.jl150Biological sequences for the julia language
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PopGen.jl46Population Genetics in Julia
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NetworkInference.jl43Methods for inferring undirected networks from data
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Bijectors.jl200Implementation of normalising flows and constrained random variable transformations
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Bio.jl261[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
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Circuitscape.jl128Algorithms from circuit theory to predict connectivity in heterogeneous landscapes
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MIToS.jl74A Julia package to analyze protein sequences, structures, and evolutionary information
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BioMakie.jl56Plotting and interface tools for biology.
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VariantVisualization.jl84Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
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Pipelines.jl46A lightweight and powerful Julia package for computational pipelines and workflows.
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MMTF.jl8A Julia package to read and write MMTF files
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Crispulator.jl17✂️ Pooled CRISPR screen optimization tool
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GeneticVariation.jl40Datastructures and algorithms for working with genetic variation
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FASTX.jl61Parse and process FASTA and FASTQ formatted files of biological sequences.
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GpABC.jl54-
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Rosalind.jl1A bioinformatics library for solving problems from rosalind.info.
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NormalizeQuantiles.jl7NormalizeQuantiles.jl implements quantile normalization
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EMIRT.jl2Electronic Microscopy Image Reconstruction Toolbox using julia language
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Bioinformatics.jl0[DEPRECATED] I deleted this repo a while ago. Forked backup from https://github.com/UnofficialJuliaMirror/Bioinformatics.jl-c429c406-9079-5a14-8339-dedc8835de90.
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