Introduction

VLModelParametersDB.jl is a a Julia package that wraps a SQLite database holding transcription (TX) and translation (TL) parameters (taken from BioNumbers and other sources), and enzyme kinetic information taken from the BRENDA enzyme database.

Installation

VLModelParametersDB.jl can be installed using the Julia package manager. From the Julia REPL enter package mode by pressing the ']' key and then issue the command:

(@v1.6) pkg> add VLModelParametersDB

VLModelParametersDB.jl can be used stand-alone, or as part of models generated using one of our various model code generators e.g., JUGRN.

Funding

The work described was supported by the Center on the Physics of Cancer Metabolism at Cornell University through Award Number 1U54CA210184-01 from the National Cancer Institute. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Cancer Institute or the National Institutes of Health.