TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).
Author PierreBarrat
10 Stars
Updated Last
1 Year Ago
Started In
May 2019


TreeKnit is a Julia package that performs the inference of Ancestral Reassortment Graph for segmented genomes (typically, human influenza). Documentation is available here.

The complete description of the algorithm is available at

TreeKnit: Inferring Ancestral Reassortment Graphs of influenza viruses
Pierre Barrat-Charlaix, Timothy G. Vaughan, Richard A. Neher bioRxiv 2021.12.20.473456; doi:

Please cite this article if you use TreeKnit!