Nucleotide_Essentials.jl

Nucleotide_Essentials.jl is a collection of tools for working with Illumina next-generation sequencing reads currently under development and testing.

Installation:

Active development is still underway but the most current version can be downloaded from the REPL using:

The package is registered in the General registry and so can be installed at the REPL with:

] add Nucleotide_Essentials

Current Functions:

• readFastq - Import a .fastq file into Julia
• readFasta - Import a .fasta file into Julia
• writeFasta - Write a .fasta or .fasta.gz to file
• FilterQuality_se - Filter single-ended Illumina reads
• FilterQuality_pe - Filter paired-end Illumina reads
• FastqtoFasta - Convert a .fastq file or FastqRecord to a FastaRecord
• potential_mismatches - Create a list of potential mismatch barcodes (mutations + deletions)
• demultiplex_se - Demultiplex single-end Illumina reads
• demultiplex_pe - Demultiplex paired-end Illumina reads
• PlotQuality - Visualize quality of .fastq file

For bug fixes, new features, and future suggestions, open an issue!

Full documentation can be found at here